Matplotlib AttributeError: 'module' object has no attribute 'popall'

Question

When trying to plot a graph with pyplot I am running the following code:

from matplotlib import pyplot as plt

x = [6, 5, 4]
y = [3, 4, 5]

plt.plot(x, y)
plt.show()

This is returning the following error:

---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-3-59955f73b463> in <module>()
      4 y = [3, 4, 5]
      5 
----> 6 plt.plot(x, y)
      7 plt.show()

/usr/local/lib/python2.7/site-packages/matplotlib/pyplot.pyc in plot(*args, **kwargs)
   3304 @_autogen_docstring(Axes.plot)
   3305 def plot(*args, **kwargs):
-> 3306     ax = gca()
   3307     # Deprecated: allow callers to override the hold state
   3308     # by passing hold=True|False

/usr/local/lib/python2.7/site-packages/matplotlib/pyplot.pyc in gca(**kwargs)
    948     matplotlib.figure.Figure.gca : The figure's gca method.
    949     """
--> 950     return gcf().gca(**kwargs)
    951 
    952 # More ways of creating axes:

/usr/local/lib/python2.7/site-packages/matplotlib/figure.pyc in gca(self, **kwargs)
   1367 
   1368         # no axes found, so create one which spans the figure
-> 1369         return self.add_subplot(1, 1, 1, **kwargs)
   1370 
   1371     def sca(self, a):

/usr/local/lib/python2.7/site-packages/matplotlib/figure.pyc in add_subplot(self, *args, **kwargs)
   1019                     self._axstack.remove(ax)
   1020 
-> 1021             a = subplot_class_factory(projection_class)(self, *args, **kwargs)
   1022 
   1023         self._axstack.add(key, a)

/usr/local/lib/python2.7/site-packages/matplotlib/axes/_subplots.pyc in __init__(self, fig, *args, **kwargs)
     71 
     72         # _axes_class is set in the subplot_class_factory
---> 73         self._axes_class.__init__(self, fig, self.figbox, **kwargs)
     74 
     75     def __reduce__(self):

/usr/local/lib/python2.7/site-packages/matplotlib/axes/_base.pyc in __init__(self, fig, rect, facecolor, frameon, sharex, sharey, label, xscale, yscale, axisbg, **kwargs)
    527 
    528         # this call may differ for non-sep axes, e.g., polar
--> 529         self._init_axis()
    530         if axisbg is not None and facecolor is not None:
    531             raise TypeError('Both axisbg and facecolor are not None. '

/usr/local/lib/python2.7/site-packages/matplotlib/axes/_base.pyc in _init_axis(self)
    620     def _init_axis(self):
    621         "move this out of __init__ because non-separable axes don't use it"
--> 622         self.xaxis = maxis.XAxis(self)
    623         self.spines['bottom'].register_axis(self.xaxis)
    624         self.spines['top'].register_axis(self.xaxis)

/usr/local/lib/python2.7/site-packages/matplotlib/axis.pyc in __init__(self, axes, pickradius)
    674         self._minor_tick_kw = dict()
    675 
--> 676         self.cla()
    677         self._set_scale('linear')
    678 

/usr/local/lib/python2.7/site-packages/matplotlib/axis.pyc in cla(self)
    758         self._set_artist_props(self.label)
    759 
--> 760         self.reset_ticks()
    761 
    762         self.converter = None

/usr/local/lib/python2.7/site-packages/matplotlib/axis.pyc in reset_ticks(self)
    769         # define 1 so properties set on ticks will be copied as they
    770         # grow
--> 771         cbook.popall(self.majorTicks)
    772         cbook.popall(self.minorTicks)
    773 

AttributeError: 'module' object has no attribute 'popall'

My matplotlib has always worked fine, but this error popped up after I reinstalled it using homebrew and pip yesterday. I am running the following:

OS: Mac OS Sierra 10.12.5
Python: 2.7.13
Matplotlib: 2.0.2

I have tried a complete reinstall of matplotlib and python again since but still getting the same error. I have also tried multiple editors (Jupiter, Sublime, Terminal).

Any help would be very appreciated!

Odd, popall has existed in the matplotlib.cbook module for a long time. Do you happen to have a file called cbook.py in your local directory that is being read by mistake? — tmdavison
– tmdavison, Commented May 24, 2017 at 11:05
I have no file called cbook.py other than in the matplotlib folder. I have opened it up and popall is defined there. I do have two matplotlib folders though one is located in /usr/local/lib/python2.7/site-packages/matplotlib and the other in /usr/local/Cellar/matplotlib. I have tried removing the the first as I was expecting everything to come from the Cellar. Could this mean its potentially a PATH issue? My homebrew .bash_profile path is: export PATH=/usr/local/bin:/usr/local/sbin:$PATH . Thanks very much for the reply. — D.Griffiths
– D.Griffiths, Commented May 24, 2017 at 11:24
not sure then, sorry. You could try importing matplotlib.cbook in a python session, and checking (a) where its being imported from, and (b) if it has the popall function — tmdavison
– tmdavison, Commented May 24, 2017 at 11:40

eecharlie · Accepted Answer · 2017-12-28 02:26:42Z

18

I had this exact error and in my case it turned out to be that both pip and conda had installed copies of matplotlib. In a 'mixed' environment with pip used to fill gaps in Anaconda, pip can automatically install upgrades to (already-installed) dependencies of the package you asked to install, creating duplication.

To test for this:

$ conda list matplotlib
# packages in environment at /home/ec2-user/anaconda3:
# 
matplotlib                2.0.2               np113py35_0
matplotlib                2.1.1                     <pip>

Problem! Fix:

$ pip uninstall matplotlib

Probably a good idea to force matplotlib upgrade to the version pip wanted:

$ conda install matplotlib=2.1.1

answered Dec 28, 2017 at 2:26

eecharlie

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1 Comment

n1k31t4 Over a year ago

(+1) - I also had to specify the channel to get the version I required: conda install -c anaconda matplotlib

D.Griffiths · Accepted Answer · 2017-05-24 11:55:56Z

4

I have solved my problem although I am not entirely sure why this has solved it.

I used pip uninstall matplotlib, to remove the python install, and also updated my ~/.zshrc and ~/.bash_profile paths to contain:

HomeBrew:

export PATH=/usr/local/bin:$PATH

Python:

export PATH=/usr/local/share/python:$PATH

This has solved the issue. I am guessing the issue was caused by having two install of matplotlib and having the path in ~/.bash_proile but not the ~/.zshrc.

answered May 24, 2017 at 11:55

D.Griffiths

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Comments

SANDEEP KUMAR H · Accepted Answer · 2019-01-29 08:24:09Z

3

I have had a similar kind of problem what I did was trying to upgrade my matplotlib using

pip install -U matplotlib

and then reopen anaconda to see it working

answered Jan 29, 2019 at 8:24

SANDEEP KUMAR H

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