I did not see the flickering you claim to be getting when I copied and ran your code on my Windows 10 computer with JDK 17. However, when I changed your code and added the label to the frame before adding the buttons and check-boxes (as you stated in your question), I did see "flickering".
Although you have already accepted @Antoniossss answer, it is not recommended to not use a layout manager. Refer to the following excerpts from Doing Without a Layout Manager
Although it is possible to do without a layout manager, you should use a layout manager if at all possible.
If a container holds components whose size is not affected by the container's size or by font, look-and-feel, or language changes, then absolute positioning might make sense.
One of the layout managers that your GUI lends itself to is GridBagLayout, although that is not the only suitable one. The below code shows how. (Note that in the below code I set the text of the JLabel so that you can see it.)
import java.awt.Container;
import java.awt.EventQueue;
import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import javax.swing.BorderFactory;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JComponent;
import javax.swing.JFrame;
public class BtnFrame {
private void createAndDisplayGui() {
JFrame frame = new JFrame("Dugme");
frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
frame.setLayout(new GridBagLayout());
createForm(frame.getContentPane());
frame.pack();
frame.setLocationByPlatform(true);
frame.setVisible(true);
}
private void createForm(Container contentPane) {
if (contentPane instanceof JComponent) {
JComponent jCmpt = (JComponent) contentPane;
jCmpt.setBorder(BorderFactory.createEmptyBorder(20, 20, 20, 20));
}
GridBagConstraints gbc = new GridBagConstraints();
gbc.anchor = GridBagConstraints.LINE_START;
gbc.gridx = 0;
gbc.gridy = 0;
gbc.insets.bottom = 5;
gbc.insets.left = 5;
gbc.insets.right = 5;
gbc.insets.top = 5;
JButton b1 = new JButton("1. Dugme");
contentPane.add(b1, gbc);
gbc.gridx = 1;
JCheckBox c1 = new JCheckBox("Prvo dugme");
contentPane.add(c1, gbc);
gbc.gridx = 0;
gbc.gridy = 1;
JButton b2 = new JButton("2. Dugme");
contentPane.add(b2, gbc);
gbc.gridx = 1;
JCheckBox c2 = new JCheckBox("Drugo dugme");
contentPane.add(c2, gbc);
gbc.gridx = 0;
gbc.gridy = 2;
gbc.anchor = GridBagConstraints.CENTER;
JLabel l1 = new JLabel("label");
contentPane.add(l1, gbc);
}
public static void main(String[] args) {
final BtnFrame gui = new BtnFrame();
EventQueue.invokeLater(() -> gui.createAndDisplayGui());
}
}
Here is a screen capture of the application.

When setting the layout manager to null in your code (as @Antoniossss said in his answer), the GUI looks like the below screen capture. (Again, I also set the text of the JLabel so that you can see it.)

As you can see, the two screen captures are practically identical.
For completeness, here is your code, with my changes, that produce the above screen capture. As you can see, I moved the line this.add(l1) and also added the line cp.setLayout(null).
import java.awt.Container;
import javax.swing.JButton;
import javax.swing.JCheckBox;
import javax.swing.JFrame;
import javax.swing.JLabel;
public class ButtonFrame extends JFrame {
public ButtonFrame(){
JButton b1 = new JButton("1. Dugme");
JButton b2 = new JButton("2. Dugme");
JLabel l1 = new JLabel();
JCheckBox c1 = new JCheckBox("Prvo dugme");
JCheckBox c2 = new JCheckBox("Drugo dugme");
Container cp = getContentPane();
cp.setLayout(null); // Added this line.
setTitle("Dugme");
setSize(400,400);
setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
setVisible(true);
this.add(l1);
this.add(b1);
this.add(b2);
this.add(c1);
this.add(c2);
// this.add(l1);
b1.setBounds(20, 30, 90, 20);
b2.setBounds(20,70,90,20);
l1.setBounds(70,120,90,20);
c1.setBounds(120,30,120,20);
c2.setBounds(120,70,120,20);
l1.setText("label");
}
public static void main(String[] args) {
ButtonFrame bf = new ButtonFrame();
}
}