Passing in-memory data to an R script to create a model

Question

I am new to R and have been trying to use JRI. I am faced with the following issue -

I have a set of values that I have received in my Java program which I have stored in a list.
I have multiple such lists - each one representing a feature.
I want to pass these lists to an R script to create a simple regression model. The script uses the lm() function.

I have come across multiple scripts which read from a file and load the data using read.table() (or other equivalent functions) before calling 'lm()'. In this particular case, I do not want to write to a file(create a new file) and again read from that file into memory - as I already have the data in memory.

Is there a way for me to pass this list from Java to the R script directly so that it can be used like a data frame? Can I pass this list as an argument?

I have searched a lot, but couldn't find anything similar. Any pointers would really be appreciated.

agstudy · Accepted Answer · 2013-12-23 08:20:51Z

3

Very easy using rJava.

java code side

I create a dummy class that generate some values.

public class test_arr {
    public double[] getValues(int n){
        double[] anArray = new double[n];
        for(int i =0; i <n;i++)
            anArray[i] = Math.random();
        return anArray;
    }
}

r code side

Using rjava package , I create an R object ( a pointer to the java object), I call the generator and I get the numeric values.

library(rJava)
.jinit("PATH_TO_YOR_JAVA_test_arr/bin") # this starts the JVM
object <- .jnew("test_arr")
nn = object$getValues(5L)
[1] 0.3667268 0.3636245 0.6796906 0.3692489 0.4051942

Then you do the regression like this :

lm(vv~nn,data=data.frame(vv,nn=runif(10)))

edited Dec 23, 2013 at 8:20

answered Dec 23, 2013 at 4:11

agstudy

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2 Comments

user2940063 Over a year ago

Thanks. Not having my dev env. with me right now but will try this asap. This also means that rJava is a must. If I have an existing R script, then it has to be modified to use rJava now. Is my understanding correct?- Milind

agstudy Over a year ago

Yep you should instal rjava package.

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