How to remove efficiently all duplicates in dataframe or csv file in python?

Question

I have the table below contained in mytest.csv as below :

timestamp   val1    val2    user_id  val3  val4    val5    val6
01/01/2011  1   100 3    5     100     3       5
01/02/2013  20  8        6     12      15      3
01/07/2012      19  57   10    9       6       6        
01/11/2014  3100    49  6        12    15      3
21/12/2012          240  30    240     30       
01/12/2013          63                  
01/12/2013  3200    51  63       50

The above was obtained using the following code in which I tried to remove all duplicates but unfortunately some remained (based on 'timestamp' and 'user_id'):

import pandas as pd

newnames = ['timestamp', 'val1', 'val2','val3', 'val4','val5', 'val6','user_id']
df = pd.read_csv('mytest.csv', names = newnames, header = False, parse_dates=True, dayfirst=True)
df['timestamp'] = pd.to_datetime(df['timestamp'], dayfirst=True) 
df = df.loc[:,['timestamp', 'user_id', 'val1', 'val2','val3', 'val4','val5', 'val6']]
df_clean = df.drop_duplicates().fillna(0)

Also, I would like to know how I can efficiently remove all duplicate from the data (pre-processing) and if I should do this before reading it into a dataframe. For example the two last rows are considered duplicates and only the last one which do not contain empty val1 (val1 = 3200) should remain in the dataframe.

Thanks in advance for your help.

Possible duplicate of Drop all duplicate rows in Python Pandas — Herpes Free Engineer
– Herpes Free Engineer, Commented Jul 4, 2018 at 17:09

joris · Accepted Answer · 2016-12-05 10:44:53Z

10

If you want to drop duplicates based on specific columns, you can use the subset argument (older pandas versions: cols) in drop_duplicates:

df_clean = df.drop_duplicates(subset=['timestamp', 'user_id'])

edited Dec 5, 2016 at 10:44

answered Apr 4, 2014 at 15:31

joris

140k37 gold badges257 silver badges207 bronze badges

Sign up to request clarification or add additional context in comments.

6 Comments

Space Over a year ago

Is it possible to equally delete rows for which val1 is nan or equal zero?

joris Over a year ago

Do you mean something like df.dropna(subset=['val1'])?

Space Over a year ago

Will that delete the entire row?

joris Over a year ago

Yes, this deletes rows where there is a NaN value in the val1 column. What do you mean with 'equally delete rows for which val1 is nan'?

Nicomak Over a year ago

cols doesn't work anymore since v0.18, it was replaced by subset

|

Collectives™ on Stack Overflow

How to remove efficiently all duplicates in dataframe or csv file in python?

1 Answer 1

6 Comments

Your Answer

Linked

Hot Network Questions

Collectives™ on Stack Overflow

1 Answer 1

6 Comments

Your Answer

Sign up or log in

Post as a guest

Linked

Related