The problem here is almost certainly related to file permissions.
When you run php.exe from the command line you run as your own logged-in user. When running a PHP script from IIS, in response to an http request, php.exe runs as a different user. Depending on your version of Windows it could be
IUSR_machine - on IIS6 and priorIUSR on IIS7 and later
These users need permissions on the php file to be executed.
Read more about it
On IIS7 and later I use a command-line tool called icacls.exe to set the permissions on directories or files that need to be read by IIS and the processes it starts (like php.exe). This security stuff applies to all IIS applications: PHP, ASPNET, ASP-classic, Python, and so on.
IIS also needs to be able to read static files, like .htm, .js, .css, .jpog, .png files and so on. You can set the same permissions for all of them: Read and Execute.
You can grant permissions directly to the user, like this:
icacls.exe YOUR-FILE-GOES-HERE /grant "NT AUTHORITY\IUSR:(RX)"
You can also grant permissions to the group, to which IUSR belongs, like this:
icacls.exe YOUR-FILE-HERE /grant "BUILTIN\IIS_IUSRS:(RX)"
In either case you may need to stop and restart IIS after setting file-level permissions.
If your .php script reads and writes other files or directories, then the same user needs pernissions on those other files and directories. If you need the .php script to be able to delete files, then you might want
icacls.exe YOUR-FILE-HERE /grant "BUILTIN\IIS_IUSRS:(F)"
...which grants full rights to the file.
You can grant permissions on an entire directory, too, specifying that all files created in that directory in the future will inherit the file-specific permissions set on the directory. For example, set the file perms for the directory, then copy a bunch of files into it, and all the files get the permissions from the parent. Do this with the OI and CI flags (those initials stand for "object-inherit" and "container-inherit").
icacls.exe DIRECTORY /grant "BUILTIN\IIS_IUSRS:(OI)(CI)(RX)"
copy FILE1 DIRECTORY
copy FILE2 DIRECTORY
...
When I want to create a new vdir in IIS, to allow running PHP scripts, or ASPX or .JS (yes, ASP Classic) or Python or whatever, I do these steps:
appcmd.exe add app /site.name:"Default Web Site" /path:/vdirpath /physicalPath:c:\docroot
icacls.exe DIRECTORY /grant "BUILTIN\IIS_IUSRS:(OI)(CI)(RX)"
Then I drop files into the directory, and they get the proper permissions.
Setting the ACL (access control list) on the directory will not change the ACL for the files that already exist in the directory. If you want to set permissions on the files that are already in the directory, you need to use icacls.exe on the particular files. icacls accepts wildcards, and it also has a /t switch that recurses.
