Validation of input data via Scanner

Before I go into a real answer to your question, I must give some advices:

1. Avoid extending JFrame, as JFrame is a rigid container, instead build your GUI towards JPanels and instantiate a JFrame, take the answers in: Extends JFrame vs. creating it inside the program as a reference

2. Why create a whole array for these lines:

   public JTextField[] textField = new JTextField[1];
   public JPasswordField[] passwordField = new JPasswordField[1];
   

   if you're going to have a single element, an array is not needed.

3. The following lines, make no sense to me, because there's no need to wrap the numbers as Integer when you could use the primitive int, this affects the performance of the program.

   private Integer[] coordXAuth = {110, 39, 25, 110, 110, 25, 25};
   private Integer[] coordYAuth = {20, 120, 170, 125, 175, 225, 285};
   

4. getContentPane().setLayout(null); STOP using null-layout! Please read carefully how to use the different layout managers, you can combine them and create cool GUIs.

   Swing was designed to use them, because it has to deal with different OS, PLAFs, screen sizes and resolutions, pixel perfect GUIs are an illusion, here is an example of what happens when you use them.

   See: Why is it frowned upon to use a null layout in Swing?, What's wrong with the Null Layout in Java? and Null layout is evil for more information.

   Stop using setLayout(null) and setBounds(...), setLocation(...) methods right now!

5. These lines:

   while (scanner.hasNextLine() == true);
   if (inputLogin.equals(login) == true && Arrays.equals(password, inputPassword) == true) { // BAD
   

   could have been written like this:

   while (scanner.hasNextLine()); //Removed == true
   if (inputLogin.equals(login) && Arrays.equals(password, inputPassword)) { //Removed == true
   

   because those methods already return a boolean, so, there's no need to compare a boolean with another one, which is the same as if (true == true), why not if (true)? It's easier to read and understand.

However I must congratulate you for placing your program on the EDT.

Now, after we've said the above recommendations, let's move on to the program... it works fine for me:

This is the console output when I ran it:

admin
GOOD

So, the problem is probably on your file, I recommend you to write it again maybe?

Here's an example that generates a similar output using:

• A GridBagLayout for the outer pane.
• A GridLayout for both user / password label and fields panes

Code:

import java.awt.GridBagConstraints;
import java.awt.GridBagLayout;
import java.awt.GridLayout;
import java.awt.Insets;
import java.awt.event.ActionListener;
import java.io.File;
import java.io.FileNotFoundException;
import java.util.Arrays;
import java.util.Scanner;

import javax.swing.JButton;
import javax.swing.JFrame;
import javax.swing.JLabel;
import javax.swing.JPanel;
import javax.swing.JPasswordField;
import javax.swing.JTextField;
import javax.swing.SwingUtilities;

public class LoginSample {
    private JFrame frame;
    private JLabel userLabel;
    private JLabel passLabel;
    private JTextField userField;
    private JPasswordField passField;
    private JButton button;
    private JButton button2;
    private File file;
    private JPanel pane;
    private JPanel contentPane;

    public static void main(String[] args) {
        SwingUtilities.invokeLater(() -> {
            new LoginSample().createAndShowGui();
        });
    }

    private void createAndShowGui() {
        GridBagConstraints gbc = new GridBagConstraints();

        frame = new JFrame(getClass().getSimpleName());
        contentPane = new JPanel();
        contentPane.setLayout(new GridBagLayout());

        userLabel = new JLabel("User: ");
        passLabel = new JLabel("Password: ");
        userField = new JTextField(10);
        passField = new JPasswordField(10);

        pane = new JPanel();
        pane.setLayout(new GridLayout(1, 2));
        pane.add(userLabel);
        pane.add(userField);

        gbc.fill = GridBagConstraints.BOTH;
        gbc.insets = new Insets(5, 5, 5, 5);
        gbc.gridx = 0;
        gbc.gridy = 0;

        contentPane.add(pane, gbc);

        gbc.gridx = 0;
        gbc.gridy = 1;
        pane = new JPanel();
        pane.setLayout(new GridLayout(1, 2));
        pane.add(passLabel);
        pane.add(passField);
        contentPane.add(pane, gbc);

        button = new JButton("Click me!");
        button2 = new JButton("Do not click me");

        file = new File("src/sof/users.txt");
        System.out.println(file.getAbsolutePath());

        button.addActionListener(listener);
        button2.addActionListener(listener);

        gbc.gridx = 0;
        gbc.gridy = 2;
        contentPane.add(button, gbc);

        gbc.gridy = 3;
        contentPane.add(button2, gbc);

        frame.add(contentPane);

        frame.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
        frame.pack();
        frame.setVisible(true);
    }

    private ActionListener listener = e -> {
        if (e.getSource().equals(button)) {
            String s = "";
            Scanner sc = null;
            try {
                sc = new Scanner(file);
                while (sc.hasNext()) {
                    s = sc.nextLine();
                    System.out.println(s);
                }
            } catch (FileNotFoundException ex) {
                ex.printStackTrace();
            } finally {
                sc.close();
            }
            String[] parts = s.split("\\.");
            String user = parts[0].trim();
            String pass = parts[1].trim();
            System.out.println(user + " <<>> " + Arrays.toString(pass.toCharArray()));
            System.out.println(userField.getText() + " <<>> " + Arrays.toString(passField.getPassword()));
            System.out.println(user.equals(userField.getText()));
            System.out.println(Arrays.equals(pass.toCharArray(), passField.getPassword()));
        } else {
            System.out.println("Told you not to click me! You made me cry :'(");
        }
    };
}

As you can see, the code is short, it's complete because you can copy-paste it and see the output with a single modification (file path), it's verifiable (it shows the same output as below), that's what you're expected to do when you're requested to do a MCVE. Without posting the relevant code, well, I couldn't have written the first five suggestions :)

My output vs yours, both are really similar, just change the fonts and it should look like the one before...