Rendering Table with conditional color in latex as a pdf document with rownames = TRUE (rmarkdown, kable and kableExtra )

Question

I am attempting to output a latex table using r markdown, kable and kableExtra. When i use the option row.names=FALSE instead of row.names=TRUE the latex code generates \vphantom code which produce an error to create the pdf . It seems the problem is linked to the row_spec option.

Here is Rmarkdown code (.Rmd File):

---
title: "Test"
output:
pdf_document: 
fig_caption: true
keep_tex: true
---

{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)


{r}
library(knitr)
library(kableExtra)

temp <- mtcars[1:5,1:5]

kable(temp, format = "latex", booktabs = F,row.names=F)  %>%
kable_styling(position = "center") %>%
row_spec(1, bold = T, background = "red")

The error is:

! Forbidden control sequence found while scanning use of \check@nocorr@. \par l.105 ...color{red} \textbf{21.0 &\vphantom{1} 6} & \textbf{160} & \textbf{...

What is happening?

It works on my computer. Have you tried with bold=F to see what happens? — kluu
– kluu, Commented Feb 27, 2018 at 23:54

Mikey Harper · Accepted Answer · 2018-02-28 00:06:21Z

4

This is caused by the duplicated rows in the dataframe, as both rows 1 and 2 are the same.

Reviewing the code for row_spec_latex, when kableExtra is used against a kable table, it checks for duplicated rows. If it finds one, it inserts the vphantom argument within the fix_duplicated_rows_latex internal function. This vphantom insertion is then messing up the formatting of the textbf function.

This seems like a slight bug, so it may be worth reporting it as an issue in kableExtra: https://github.com/haozhu233/kableExtra . I am sure that the vphantom is added for a good reason though, but doubt this was an intended consequence.

Supporting code:

---
output: pdf_document
---

```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = FALSE)

library(knitr)
library(kableExtra)
temp <- mtcars[1:5,1:5]
```

```{r}
# Keeping the row names (means all rows are unique)
kable(temp, format = "latex", booktabs = F)  %>%
  kable_styling(position = "center") %>%
  row_spec(1, bold = T, color = "red")
```

```{r}
# Highlighting second row (which doesn't have the vphantom statement)
kable(temp, format = "latex", booktabs = F, row.names=F)  %>%
  kable_styling(position = "center") %>%
  row_spec(2, bold = T, color = "red")
```

answered Feb 28, 2018 at 0:06

Mikey Harper

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1 Comment

Jean-baptiste Paulin Over a year ago

I reported the error to github in kableExtra. Thanks a lot for your help !

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