Make an executable jar using maven java application in netbeans

You need to package the dependency inside the executable jar. It is a 2 step process: First, copy all required dependencies into a folder:

<plugin>
    <groupId>org.apache.maven.plugins</groupId>
    <artifactId>maven-dependency-plugin</artifactId>
    <executions>
        <execution>
            <id>copy-dependencies</id>
            <phase>prepare-package</phase>
            <goals>
                <goal>copy-dependencies</goal>
            </goals>
            <configuration>
                <outputDirectory>
                    ${project.build.directory}/libs
                </outputDirectory>
            </configuration>
        </execution>
    </executions>
</plugin>

Now all the dependencies will be copied in libs folder.

The second step is the creation of an executable and classpath aware jar, with the link to the dependencies copied in the first step:

<plugin>
    <groupId>org.apache.maven.plugins</groupId>
    <artifactId>maven-jar-plugin</artifactId>
    <configuration>
        <archive>
            <manifest>
                <addClasspath>true</addClasspath>
                <classpathPrefix>libs/</classpathPrefix>
                <mainClass>
                    com.oli.ffmpegchunker.MainScreen
                </mainClass>
            </manifest>
        </archive>
    </configuration>
</plugin>

The overall pom will look like:

<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>
    <groupId>com.oli</groupId>
    <artifactId>FFmpegchunker</artifactId>
    <version>1.0.0</version>
    <packaging>jar</packaging>
    <build>
        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-dependency-plugin</artifactId>
                <executions>
                    <execution>
                        <id>copy-dependencies</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>copy-dependencies</goal>
                        </goals>
                        <configuration>
                            <outputDirectory>
                                ${project.build.directory}/libs
                            </outputDirectory>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <configuration>
                    <archive>
                        <manifest>
                            <addClasspath>true</addClasspath>
                            <classpathPrefix>libs/</classpathPrefix>
                            <mainClass>
                                com.oli.ffmpegchunker.MainScreen
                            </mainClass>
                        </manifest>
                    </archive>
                </configuration>
            </plugin>
        </plugins>
    </build>
    <dependencies>
        <dependency>
            <groupId>com.github.kokorin.jaffree</groupId>
            <artifactId>jaffree</artifactId>
            <version>0.9.3</version>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
            <version>1.7.5</version>
        </dependency>
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-simple</artifactId>
            <version>1.6.4</version>
        </dependency>
    </dependencies>
    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <maven.compiler.source>1.8</maven.compiler.source>
        <maven.compiler.target>1.8</maven.compiler.target>
    </properties>
</project>

You can find some simpler approaches for executable jar creation over here using maven assembly plugin and shade plugin.