You may need to isolate activities per location / interval. A solution would be to use an index for each interval, this involve to change the way you create the new html elements for each interval.
So the resulting code would be :
<!--Interval 1 with 4 activities-->
<input type="text" name="interval[1][]" />
<input type="text" name="location[1][]" />
<input type="text" name="activity[1][]" />
<input type="text" name="activity[1][]" />
<input type="text" name="activity[1][]" />
<input type="text" name="activity[1][]" />
<!--Interval 2 with 2 activities-->
<input type="text" name="interval[2][]" />
<input type="text" name="location[2][]" />
<input type="text" name="activity[2][]" />
<input type="text" name="activity[2][]" />
But it's not as smooth to manipulate as :
<!--Interval 1 with 4 activities-->
<input type="text" name="interval[1][interval]" value="interval id" /> // optional
<input type="text" name="interval[1][location]" value="location" />
<input type="text" name="interval[1][activity][]" value="activity" />
<input type="text" name="interval[1][activity][]" value="activity" />
<input type="text" name="interval[1][activity][]" value="activity" />
<input type="text" name="interval[1][activity][]" value="activity" />
<!--Interval 2 with 2 activities-->
<input type="text" name="interval[2][interval]" value="interval id" /> // optional
<input type="text" name="interval[2][location]" value="location" />
<input type="text" name="interval[2][activity][]" value="activity" />
<input type="text" name="interval[2][activity][]" value="activity" />
Which will give you a nice tree ( in the form of arrays of arrays ) to iterate over.
In order to do that, you need a javascript function that keep a track of the current interval index ans use that index to order the array of intervals.
Server side all you have to do is ( in case of POST method ) :
foreach ( $_POST['interval'] as $k => $interval ) {
echo $interval['interval'];
echo $interval['location'];
foreach ( $interval['activity'] as $id => $activity )
echo $activity;
}