Plot and save of multiple rasters using ggplot() in a for loop

Question

I am trying to open, plot and save multiple rasters into image files. For this, I wrote this script:

library(raster)
library(rgdal)
library(ggplot2)
library(dplyr)

species <- read.csv(file = 'C:/species.csv', sep=";")

for (sp.n in colnames(species)) {

    rsts <- raster(paste('C:/rasters/', sp.n, '.grd', sep=''))
       
    rsts_df <- as.data.frame(rsts, xy = TRUE)

    names(rsts_df)[3] <- sp.n

    ggplot() +
    geom_raster(data = rsts_df, aes(x = x, y = y, fill = sp.n), na.rm = TRUE) +
    scale_fill_gradient(low = "white", high = "violetred4") +
    coord_quickmap()

    ggsave(paste('C:/imgs/', sp.n, '.png', sep=''))
}

However, I get this message:

Error: Discrete value supplied to continuous scale

The thing is, if I do the plots individually for each raster, outside the loop, it works. I believe it has something to do with the 'fill = sp.n'. Do you have an idea of what I am doing wrong?

lovalery · Accepted Answer · 2022-02-01 14:34:24Z

1

While running the code in the loop, your "sp.n" is a character, while ggplot2 takes the bare unquoted name sp.n. For instance, if you run the code:

library(ggplot2)
ggplot() +
geom_raster(data = rsts_df, aes(x = x, y = y, fill = "col.name"), na.rm = TRUE)

you will probably get the same error. Instead you should use fill = .data[[sp.col]]

ggplot() +
geom_raster(data = rsts_df, 
            aes(x = x, y = y, fill = .data[[sp.n]]), 
            na.rm = TRUE)

This is all based on the concept of tidy evaluation. You can read more about it on "Programming with dplyr"

edited Feb 1, 2022 at 14:34

lovalery

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answered Feb 1, 2022 at 13:10

AdroMine

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1 Comment

FlipAD Over a year ago

It worked! Thanks a lot! I will check that article in the meantime.

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