10 questions
1
vote
0
answers
223
views
Certain Polar contacts are not appearing
I have predicted the binding affinity between two proteins with Prodigy, the input being the relevant protein-protein complex that I generated through docking with HADDOCK . I am now using PyMOL to ...
- 11
1
vote
0
answers
68
views
Why is my SpaCy model returning an empty dictionary
Here is how I created the model and how I am testing it. For the life of me, I can't figure out why it's returning an empty dictionary without any predictions.
I used prodigy to annotate some data ...
- 805
1
vote
1
answer
442
views
Convert Prodigy JSONL / Spacy Doc format to CONLL
I have been searching for a while now but haven't found any solution to my problem. For a relation classification task I have annotated several news like text documents with prodigy annotation ...
- 11
2
votes
1
answer
136
views
Prodigy - Using pattern file with model
Can you add a pattern file to a model?
matcher = Matcher(nlp_lg.vocab)
pattern = [{"LOWER": "tumulus"}]
matcher.add("thing", [pattern])
MyText = df.loc[52]["TEXT&...
- 87
0
votes
1
answer
103
views
Bash variable substitution in Prodigy
I want to export the results of a Prodigy tagging session through the command db-out. Prodigy is installed in a Google Compute Engine VM, however, I am not the owner of it and for that reason, what I ...
- 879
3
votes
1
answer
547
views
Run ner.manual in Prodigy on csv file
I am new to Prodigy and haven't fully figured out the paradigm.
For a project, I would like to manually annotate names from texts. My team has developed our own model to recognize the names, so I only ...
- 1,752
1
vote
1
answer
174
views
For integer/dates values annotated using Prodigy, does the spaCy model learn the range of values as well?
I have a prodigy session set up to annotate certain numeric values in a document for age (ranges from 0 to 100). I am only annotating the number. My question is, suppose there is a corrupt value which ...
- 93
1
vote
0
answers
541
views
Prodigy + Spacy to train dataset
I would like an example of using Prodigy to train a dataset (text file with some named entities). This file would be in Portuguese. The idea would be to train a model with Prodigy to make notes for ...
0
votes
1
answer
2k
views
Convert from Prodigy's JSONL format for labeled NER to spaCy's training format?
I am new to Prodigy and spaCy as well as CLI coding. I'd like to use Prodigy to label my data for an NER model, and then use spaCy in python to create models.
Prodigy outputs in SQLite format. SpaCy ...
0
votes
2
answers
298
views
Access Prodigy UI in Kubernetes Pod
I am attempting to create a service for creating training datasets using the Prodigy UI tool. I would like to do this using a Kubernetes cluster which is running in Azure cloud. My Prodigy UI should ...
- 13.2k