This can be done by using the ButtonDownFcn property of Scatter objects.
In the main script:
% --- Define your data
N = 10;
x = rand(N,1);
y = rand(N,1);
% --- Plot and define the callback
h = scatter(x, y, 'bo');
set(h, 'ButtonDownFcn', @myfun);
and in the function myfun:
function myfun(h, e)
% --- Get coordinates
x = get(h, 'XData');
y = get(h, 'YData');
% --- Get index of the clicked point
[~, i] = min((e.IntersectionPoint(1)-x).^2 + (e.IntersectionPoint(2)-y).^2);
% --- Do something
hold on
switch e.Button
case 1, col = 'r';
case 2, col = 'g';
case 3, col = 'b';
end
plot(x(i), y(i), '.', 'color', col);
i is the index of the clicked point, so x(i) and y(i) are the coordinates of the clicked point.
Amazingly enough, the mouse button which performed the action is stored in e.Button:
- 1: left click
- 2: middle click
- 3: right click
so you can play around with that too. Here is the result:

Best,